Spaz, I agree, the problem is that it is very difficult to nail the proper direction for the wind, because for example if you enter 5 degrees for the wind in the weather options screen, you get 15 degrees wind magnetic and about 359 true. So you obviously have 16 degrees of magnetic variation in that particular location, but where does the 5 degree come from ?!? It is neither true, nor magnetic.
But I totally agree - the direction of the wind must be down the angled deck, not the carrier carrier course.